Index

A

atom_selector (liquidlib.api.quantity.Quantity attribute)

AtomSelector (class in liquidlib.api.atom_selector)

C

CoherentIntermediateScattering (class in liquidlib.coherent_intermediate_scattering) CoherentVanHoveFunction (class in liquidlib.coherent_van_hove_function)

compute_velocities() (liquidlib.api.trajectory.Trajectory method) create_trajectory() (liquidlib.api.trajectory_factory.TrajectoryFactory method)

D

DecoratorOfInputValidator (class in liquidlib.api.input_validator)

DemoPairDistributionFunction (class in liquidlib.pair_distribution_function) DemoTrajectoryFactory (class in liquidlib.api.trajectory_factory)

E

execute() (liquidlib.api.quantity.Quantity method)

G

generate() (liquidlib.api.kvector_generator.KvectorGenerator method) (liquidlib.api.kvector_generator.PermutationKevectorGenerator method) (liquidlib.api.kvector_generator.RecursionKvectorGenerator method)

GenericInputValidator (class in liquidlib.api.input_validator)

I

input_validator (liquidlib.api.quantity.Quantity attribute)

InputParser (class in liquidlib.api.input_parser) InputValidator (class in liquidlib.api.input_validator)

K

KSpaceDecorator (class in liquidlib.api.input_validator) KSpaceTDomainValidator (class in liquidlib.api.input_validator)

KSpaceValidator (class in liquidlib.api.input_validator) KvectorGenerator (class in liquidlib.api.kvector_generator)

L

LammpsTrajectory (class in liquidlib.api.trajectory) liquidlib (module) liquidlib.api (module) liquidlib.api.atom_selector (module) liquidlib.api.input_parser (module) liquidlib.api.input_validator (module) liquidlib.api.kvector_generator (module) liquidlib.api.output_writer (module)

liquidlib.api.quantity (module) liquidlib.api.trajectory (module) liquidlib.api.trajectory_factory (module) liquidlib.coherent_intermediate_scattering (module) liquidlib.coherent_van_hove_function (module) liquidlib.mean_squared_displacement (module) liquidlib.pair_distribution_function (module) liquidlib.quantity_template (module)

M

main() (in module liquidlib.coherent_intermediate_scattering) (in module liquidlib.coherent_van_hove_function) (in module liquidlib.mean_squared_displacement) (in module liquidlib.pair_distribution_function) (in module liquidlib.quantity_template)

MeanSquaredDisplacement (class in liquidlib.mean_squared_displacement)

O

OutputWriter (class in liquidlib.api.output_writer)

P

PairDistributionFunction (class in liquidlib.pair_distribution_function) parse() (liquidlib.api.input_parser.InputParser static method)

PdbTrajectory (class in liquidlib.api.trajectory) PermutationKevectorGenerator (class in liquidlib.api.kvector_generator) prepare_trajectory() (liquidlib.api.trajectory_factory.DemoTrajectoryFactory method)

Q

Quantity (class in liquidlib.api.quantity)

R

read() (liquidlib.api.trajectory.LammpsTrajectory method) (liquidlib.api.trajectory.PdbTrajectory method) (liquidlib.api.trajectory.Trajectory method) (liquidlib.api.trajectory.TrrTrajectory method) (liquidlib.api.trajectory.XtcTrajectory method) (liquidlib.api.trajectory.XyzTrajectory method)

RecursionKvectorGenerator (class in liquidlib.api.kvector_generator) RSpaceDecorator (class in liquidlib.api.input_validator) RSpaceTDomainValidator (class in liquidlib.api.input_validator) RSpaceValidator (class in liquidlib.api.input_validator)

S

select() (liquidlib.api.atom_selector.AtomSelector method) (liquidlib.api.atom_selector.SelectByAtomId method) (liquidlib.api.atom_selector.SelectByZDepth method)

SelectByAtomId (class in liquidlib.api.atom_selector) SelectByZDepth (class in liquidlib.api.atom_selector)

T

TDomainDecorator (class in liquidlib.api.input_validator) TDomainValidator (class in liquidlib.api.input_validator) TemplateQuantity (class in liquidlib.quantity_template) TemplateQuantityValidator (class in liquidlib.quantity_template)

Trajectory (class in liquidlib.api.trajectory) trajectory_factory (liquidlib.api.quantity.Quantity attribute) TrajectoryFactory (class in liquidlib.api.trajectory_factory) TrrTrajectory (class in liquidlib.api.trajectory)

U

unwrap_coordinates() (liquidlib.api.trajectory.Trajectory method)

V

validate() (liquidlib.api.input_validator.GenericInputValidator method) (liquidlib.api.input_validator.InputValidator method) (liquidlib.api.input_validator.KSpaceDecorator method) (liquidlib.api.input_validator.KSpaceTDomainValidator method) (liquidlib.api.input_validator.KSpaceValidator method) (liquidlib.api.input_validator.RSpaceDecorator method) (liquidlib.api.input_validator.RSpaceTDomainValidator method) (liquidlib.api.input_validator.RSpaceValidator method) (liquidlib.api.input_validator.TDomainDecorator method) (liquidlib.api.input_validator.TDomainValidator method) (liquidlib.quantity_template.TemplateQuantityValidator method)

W

wrap_coordinates() (liquidlib.api.trajectory.Trajectory method)

write1D() (liquidlib.api.output_writer.OutputWriter static method) write2D() (liquidlib.api.output_writer.OutputWriter static method)

X

XtcTrajectory (class in liquidlib.api.trajectory)

XyzTrajectory (class in liquidlib.api.trajectory)